Fixed some bugs when running on the hpc. Changed CMakeLists.txt to use subdirectory pybind11

CMakeLists.txt

@@ -11,6 +11,7 @@ set(SOURCES "${SOURCE_DIR}/agentFunctions.cpp")
 set(SOURCES "${SOURCE_DIR}/evidenceFunctions.cpp")
 
 # Generate python module
-find_package(pybind11 REQUIRED)
+#find_package(pybind11 REQUIRED)
+add_subdirectory(pybind11)
 pybind11_add_module(agentFunctions ${SOURCES} "${SOURCE_DIR}/bindings.cpp")
 pybind11_add_module(evidenceFunctions ${SOURCES} "${SOURCE_DIR}/bindings.cpp")

src/noComparisonSimulation/agentFunctions.cpp

@@ -22,7 +22,7 @@ py::array_t<double> update_on_evidence(int evidence_id, double distrust,
     double b_evidence = belief_ptr[evidence_id];
 
     /* Evidential updating is undefined for inconsistent cases */
-    if ((distrust == 0) && (b_minSite == 1))
+    if ((distrust == 0) && (b_evidence == 1))
     {
         return belief;
     }

src/noComparisonSimulation/bindings.cpp

@@ -17,5 +17,5 @@ PYBIND11_MODULE(agentFunctions, m){
 
 PYBIND11_MODULE(evidenceFunctions, m){
     m.doc() = "Functions for improving evidence performance";
-    m.def("pick_option", &pick_option, "Picks an option from a weighted distribution")
+    m.def("pick_option", &pick_option, "Picks an option from a weighted distribution");
 }

src/noComparisonSimulation/evidenceFunctions.cpp

@@ -5,7 +5,7 @@
 #include <vector>
 #include <math.h>
 
-#include "evidenceFunction.hpp"
+#include "evidenceFunctions.hpp"
 
 int pick_option(int num_options, py::array_t<double> weights){
     if (weights.ndim() != 1)
@@ -34,7 +34,5 @@ int pick_option(int num_options, py::array_t<double> weights){
       }
 
     }
-    selected; // when iterations end, selected is some element of sequence.
-  }
-  return selected;
+    return selected;
 }

src/noComparisonSimulation/evidenceFunctions.hpp

@@ -13,3 +13,5 @@ namespace py = pybind11;
    \param weights : a pybind11 numpy array with the weights for the options
 */
 int pick_option(int num_option, py::array_t<double> weights);
+
+#endif